Francesco Ferrari Lab

Recent publications

1. Federica Lucini, Cristiano Petrini, Elisa Salviato, Koustav Pal, Valentina Rosti, Francesca Gorini, Philina Santarelli, Roberto Quadri, Giovanni Lembo, Giulia Graziano, Emanuele Di Patrizio Soldateschi, Ilario Tagliaferri, Eva Pinatel, Endre Sebestyén, Luca Rotta, Francesco Gentile, Valentina Vaira, Chiara Lanzuolo*, Francesco Ferrari*.
   Biochemical properties of chromatin domains define genome compartmentalization.
   Nucleic Acids Research 2024 - IN PRESS
   (* co-corresponding/co-last authors)
2. Judith Mary Hariprakash, Elisa Salviato, Federica La Mastra, Endre Sebestyén, Ilario Tagliaferri, Raquel Sofia Silva, Federica Lucini, Lorenzo Farina, Mario Cinquanta, Ilaria Rancati, Mirko Riboni, Simone Minardi, Luca Roz, Francesca Gorini, Chiara Lanzuolo, Stefano Casola, Francesco Ferrari.
   Leveraging tissue-specific enhancer-target gene regulatory networks identifies enhancer somatic mutations that functionally impact lung cancer.
   Cancer Research 2024 Jan 2;84(1):133-153.
   
3. Salviato E*, Djordjilović V, Hariprakash JM, Tagliaferri I, Pal K, Ferrari F*.
   Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory interactions.
   Nucleic Acids Research 2021 Sep 27;49(17):e97.
   (* co-corresponding authors)
4. Pal K* and Ferrari F*.
   Visualising and annotating Hi-C data. Book chapter for "Hi-C data analysis: methods and protocols" volume of the Methods in Molecular Biology book series by Springer.
   2021
   (* co-corresponding authors)
5. Sebestyén E, Marullo F, Lucini F, Petrini C, Bianchi A, Valsoni S, Olivieri I, Antonelli L, Gregoretti F, Oliva G, Ferrari F*, Lanzuolo C*.
   SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria Syndrome.
   Nature Communications 2020 Dec 8;11(1):6274.
   (* co-corresponding/co-last authors)
6. Pal K, Forcato M, Jost D, Sexton T, Vaillant C, Salviato E, Mazza EMC, Lugli E, Cavalli G, Ferrari F.
   Global chromatin conformation differences in the Drosophila dosage compensated chromosome X.
   Nature Communications 2019 Nov 25;10(1):5355.