Pubblicazioni Angela Bachi

1. Jevtic Z, Matafora V, Casagrande F, Santoro F, Minucci S, Garre? M, Rasouli M, Heidenreich O, Musco G, Schwaller J, Bachi A.
   SMARCA5 interacts with NUP98-NSD1 oncofusion protein and sustains hematopoietic cells transformation.
   J Exp Clin Cancer Res 2022 24;41(1):34. doi: 10.1186/s13046-022-02248-x.


2. Frayssinhes JA, Cerruti F, Laulin J, Cattaneo A, Bachi A, Apcher S, Coux O, Cascio P.
   PA28γ-20S proteasome is a proteolytic complex committed to degrade unfolded proteins.
   Mol Life Sci. 2021 Dec 16. doi: 10.1007/s00018-021-04045-9.


3. Cattaneo A, Martano G, Restuccia U, Tronci L, Bianchi M, Bachi A#, Matafora V.
   Opti-nQL: An Optimized, Versatile and Sensitive Nano-LC Method for MS-Based Lipidomics Analysis.
   Metabolites. 2021 Oct 21;11(11):720. doi: 10.3390/metabo11110720.


4. Ajazi A, Bruhn C, Shubassi G, Lucca C, Ferrari E, Cattaneo A, Bachi A, Manfrini N, Biffo S, Martini E, Minucci S, Vernieri C, Foiani M.
   Endosomal trafficking and DNA damage checkpoint kinases dictate survival to replication stress by regulating amino acid uptake and protein synthesis.
   Dev Cell. 2021 Sep 27;56(18):2607-2622.e6. doi: 10.1016/j.devcel.2021.08.019.


5. Kosar M, Giannattasio M, Piccini D, Maya-Mendoza A, García-Benítez F, Bartkova J, Barroso SI, Gaillard H, Martini E, Restuccia U, Ramirez-Otero MA, Garre M, Verga E, Andújar-Sánchez M, Maynard S, Hodny Z, Costanzo V, Kumar A, Bachi A, Aguilera A, Bartek J, Foiani M.
   The human nucleoporin Tpr protects cells from RNA-mediated replication stress.
   Nat Commun. 2021 Jun 24;12(1):3937. doi: 10.1038/s41467-021-24224-3.


6. Mangiameli E, Cecchele A, Morena F, Sanvito F, Matafora V, Cattaneo A, Della Volpe L, Gnani D, Paulis M, Susani L, Martino S, Di Micco R, Bachi A, Gritti A.
   Human iPSC-based neurodevelopmental models of globoid cell leukodystrophy uncover patient- and cell type-specific disease phenotypes.
   Stem Cell Reports. 2021 Jun 8;16(6):1478-1495. doi: 10.1016/j.stemcr.2021.04.011


7. Matafora V, Bachi A.
   Missing Value Monitoring to Address Missing Values in Quantitative Proteomics.
   Methods Mol Biol. 2021;2228:401-408. doi: 10.1007/978-1-0716-1024-4_27.


8. Farris F, Matafora V, Bachi A.
   The emerging role of β--secretases in cancer.
   J Exp Clin Cancer Res. 2021 40(1):147. doi: 10.1186/s13046-021-01953-3.


9. Matafora V, Lanzani C, Zagato L, Manunta P, Zacchia M, Trepiccione F, Simonini M, Capasso G, Bachi A.
   Urinary proteomics reveals key markers of salt sensitivity in hypertensive patients during saline infusion.
   J Nephrol. 2021 Jan 4. doi: 10.1007/s40620-020-00877-z.


10. Matafora V, Bachi A.
    Secret3D Workflow for Secretome Analysis.
    STAR Protocols. 2020 Dec 15;1(3):100162. doi: 10.1016/j.xpro.2020.100162.


11. Matafora V, Farris F, Restuccia U, Tamburri S, Martano G, Bernardelli C, Sofia A, Pisati F, Casagrande F, Lazzari L, Marsoni S, Bonoldi E, Bachi A.
    Amyloid aggregates accumulate in melanoma metastasis modulating YAP activity.
    EMBO Rep. 2020 Sep 3;21(9):e50446. doi: 10.15252/embr.202050446.


12. Bruckmann C, Tamburri S, De Lorenzi V, Doti N, Monti A, Mathiasen L, Cattaneo A, Ruvo M, Bachi A, Blasi F.
    Mapping the native interaction surfaces of PREP1 with PBX1 by cross-linking mass-spectrometry and mutagenesis.
    Sci Rep. 2020 Oct 8;10(1):16809. doi: 10.1038/s41598-020-74032-w.


13. Bisi S, Marchesi S, Rizvi A, Carra D, Beznoussenko GV, Ferrara I, Deflorian G, Mironov A, Bertalot G, Pisati F, Oldani A, Cattaneo A, Saberamoli G, Pece S, Viale G, Bachi A, Tripodo C, Scita G, Disanza A.
    IRSp53 controls plasma membrane shape and polarized transport at the nascent lumen in epithelial tubules.
    Nat Commun. 2020 Jul 14;11(1):3516. doi: 10.1038/s41467-020-17091-x.


14. Martano G, Leone M, D'Oro P, Matafora V, Cattaneo A, Masseroli M, Bachi A
    SMfinder: Small Molecules Finder for Metabolomics and Lipidomics Analysis
    Anal Chem. 2020 Jul 7;92(13):8874-8882. doi: 10.1021/acs.analchem.0c00585. Epub 2020 Jun 16.


15. Atashpaz S, Samadi Shams S, Gonzalez JM, Sebestyèn E, Arghavanifard N, Gnocchi A, Albers E, Minardi S, Faga G, Soffientini P, Allievi E, Cancila V, Bachi A, Fernàndez-Capetillo Ó, Tripodo C, Ferrari F, LÓpez-Contreras AJ, Costanzo V.
    ATR expands embryonic stem cell fate potential in response to replication stress.
    Elife. 2020 Mar 12;9:e54756. doi: 10.7554/eLife.54756.


16. Kidiyoor GR, Li Q, Bastianello G, Bruhn C, Giovannetti I, Mohamood A, Beznoussenko GV, Mironov A, Raab M, Piel M, Restuccia U, Matafora V, Bachi A, Barozzi S, Parazzoli D, Frittoli E, Palamidessi A, Panciera T, Piccolo S, Scita G, Maiuri P, Havas KM, Zhou ZW, Kumar A, Bartek J, Wang ZQ, Foiani M.
    ATR is essential for preservation of cell mechanics and nuclear integrity during interstitial migration.
    Nat Commun. 2020 Sep 24;11(1):4828. doi: 10.1038/s41467-020-18580-9.


17. Lorenzato A, Magrì A, Matafora V, Audrito V, Arcella P, Lazzari L, Montone M, Lamba S, Deaglio S, Siena S, Bertotti A, Trusolino L, Bachi A, Di Nicolantonio F, Bardelli A, Arena S.
    Vitamin C Restricts the Emergence of Acquired Resistance to EGFR-Targeted Therapies in Colorectal Cancer.
    Cancers (Basel). 2020 Mar 14;12(3):685. doi: 10.3390/cancers12030685.


18. Soffientini P, Bachi A.
    STAGE-diging: A novel in-gel digestion processing for proteomics samples.
    J Proteomics. 2016 May 17;140:48-54. doi: 10.1016/j.


19. Aze A, Sannino V, Soffientini P, Bachi A, Costanzo V.
    Centromeric DNA replication reconstitution reveals DNA loops and ATR checkpoint suppression.
    Nat Cell Biol. 2016 Apr 25. doi: 10.1038/ncb3344. [Epub ahead of print]


20. Matafora V, Cuccurullo M, Beneduci A, Petrazzuolo O, Simeone A, Anastasio P, Mignani R, Feriozzi S, Pisani A, Comotti C, Bachi A, Capasso G.
    Early markers of Fabry disease revealed by proteomics.
    Mol Biosyst. 2015 May 19;11(6):1543-51


21. Jachetti E, Caputo S, Mazzoleni S, Brambillasca CS, Parigi SM, Grioni M, Piras IS, Restuccia U, Calcinotto A, Freschi M, Bachi A, Galli R, Bellone M.
    Tenascin-C Protects Cancer Stem-like Cells from Immune Surveillance by Arresting T-cell Activation.
    Cancer Res. 2015 May 15;75(10):2095-108.


22. Milan E, Perini T, Resnati M, Orfanelli U, Oliva L, Raimondi A, Cascio P, Bachi A, Marcatti M, Ciceri F, Cenci S.
    A Plastic SQSTM1/p62-Dependent Autophagic Reserve Maintains Proteostasis and Determines Proteasome Inhibitor Susceptibility in Multiple Myeloma Cells.
    Autophagy. 2015;11(7):1161-78.


23. Marino M, Stoilova T, Giorgi C, Bachi A, Cattaneo A, Auricchio A, Pinton P, Zito E.
    SEPN1, an endoplasmic reticulum-localized selenoprotein linked to skeletal muscle pathology, counteracts hyperoxidation by means of redox-regulating SERCA2 pump activity.
    Hum Mol Genet. 2015 Apr 1;24(7):1843-55.


24. Poitelon Y, Bogni S, Matafora V, Della-Flora Nunes G, Hurley E, Ghidinelli M, Katzenellenbogen BS, Taveggia C, Silvestri N, Bachi A, Sannino A, Wrabetz L, Feltri ML.
    Spatial mapping of juxtacrine axo-glial interactions identifies novel molecules in peripheral myelination.
    Nat Commun. 2015 Sep 18;6:8303.


25. Brunati M, Perucca S, Han L, Cattaneo A, Consolato F, Andolfo A, Schaeffer C, Olinger E, Peng J, Santambrogio S, Perrier R, Li S, Bokhove M, Bachi A, Hummler E, Devuyst O, Wu Q, Jovine L, Rampoldi L.
    The serine protease hepsin mediates urinary secretion and polymerisation of Zona Pellucida domain protein uromodulin.
    Elife. 2015 Dec 17;4.


26. Matafora V, Zagato L, Ferrandi M, Molinari I, Zerbini G, Casamassima N, Lanzani C, Delli Carpini S, Trepiccione F, Manunta P, Bachi A , Capasso GB.
    Quantitative proteomics reveals novel therapeutic and diagnostic markers in hypertension.
    BBA Clinical 2 (2014) 79-87.


27. Cossetti C, Iraci N, Mercer TR, Leonardi T, Alpi E, Drago D, Alfaro-Cervello C, Saini HK, Davis MP, Schaeffer J, Vega B, Stefanini M, Zhao C, Muller W, Garcia-Verdugo JM, Mathivanan S, Bachi A, Enright AJ, Mattick JS, Pluchino S
    Extracellular Vesicles from Neural Stem Cells Transfer IFN-γ via Ifngr1 to Activate Stat1 Signaling in Target Cells.
    Mol Cell. 2014 Oct 23;56(2):193-204.


28. Flury V, Restuccia U, Bachi A, Mühlemann O.
    Characterization of phosphorylation- and RNA-dependent UPF1 interactors by quantitative proteomics.
    J Proteome Res. 2014 Jun 6;13(6):3038-53.


29. Gregorc V, Novello S, Lazzari C, Barni S, Aieta M, Mencoboni M, Grossi F, De Pas T, de Marinis F, Bearz A, Floriani I, Torri V, Bulotta A, Cattaneo A, Grigorieva J, Tsypin M, Roder J, Doglioni C, Levra MG, Petrelli F, Foti S, Viganò M, Bachi A, Roder H.
    Predictive value of a proteomic signature in patients with non-small-cell lung cancer treated with second-line erlotinib or chemotherapy (PROSE): a biomarker-stratified, randomised phase 3 trial.
    Lancet Oncol. 2014 Jun;15(7):713-21.


30. Bachi A, Dalle Donne I, Scaloni A.
    Redox Proteomics: chemical principles, methodological approaches and biological/biomedical promises.
    Chem Rev. 2013 Jan 9;113(1):596-698.


31. Gaetani M, Matafora V, Saare M, Spiliotopoulos D, Mollica L, Quilici G, Chignola F, Mannella V, Zucchelli C, Peterson P, Bachi A*, Musco G.
    AIRE-PHD fingers are structural hubs to maintain the integrity of chromatin associated interactome.
    Nucleic Acids Res. 2012;40(22):11756-68.


32. Lechman ER, Gentner B, Giustacchini A, van Galen P, Saini M, Boccalatte F, Hiramatsu H, Restuccia U, Bachi A, Voisin V, Bader GD, Dick JE, Naldini L.
    Attenuation of miR-126 activity expands HSC in vivo without exhaustion.
    Cell Stem Cell 2012 Dec 7;11(6):799-81.


33. Venereau E, Casalgrandi M, Schiraldi M, Antoine DJ, Cattaneo A, De Marchis F, Liu J, Antonelli A, Andersson U, Tracey KJ, Bachi A, Uguccioni M, Bianchi ME.
    Mutually exclusive redox forms of HMGB1 promote cell recruitment or proinflammatory cytokine release.
    J Exp Med 2012 Aug 27;209(9):1519-28.


34. Torta F, Bachi A.
    Quantitative analysis of s-nitrosylated proteins.
    Methods Mol Biol. 2012;893:405-16.


35. Milan E, Lazzari C, Anand S, Floriani I, Torri V, Sorlini C, Gregorc V, Bachi A.
    SAA1 is over-expressed in plasma of Non Small Cell Lung Cancer patients with poor outcome after treatment with Epidermal Growth Factor Receptor Tyrosine-Kinase Inhibitors.
    J Proteomics 2012 Dec;76 Spec No.:91-101.


36. Tasso R, Gaetani M, Molino E, Cattaneo A, Monticone M, Bachi A, Cancedda R.
    The role of bFGF on the ability of MSC to activate endogenous regenerative mechanisms in an ectopic bone formation model.
    Biomaterials. 2012 Mar;33(7):2086-96.


37. Ricciardi S, Ungaro F, Hambrock M, Stefanelli G, Brambilla D, Sessa A, Rademacher N, Magagnotti C, Bachi A, Kilstrup-Nielsen C, Sala C, Kalscheuer VM, Broccoli V.
    CDKL5 ensures excitatory synapse stability by reinforcingNGL-PSD95 interaction on the post-synaptic compartment.
    Nat Cell Biol 2012 Sep;14(9):911-23.


38. Torta F., Fusi M., Casari C.S., Li Bassi A. Bachi A.
    Nanostructured TiO₂ Thin Films for Phosphoproteomics Studies with MALDI Mass Spectrometry.
    Methods Mol Biol. 2011;790:173-81.


39. La Marca R, Cerri F, Horiuchi K, Bachi A, Feltri ML, Wrabetz L, Blobel CP, Quattrini A, Salzer JL, Taveggia C.
    TACE (ADAM17) inhibits Schwann cell myelination.
    Nat Neurosci. 2011 Jun 12;14(7):857-65.


40. Scielzo C, Bertilaccio MT, Simonetti G, Dagklis A, ten Hacken E, Fazi C, Muzio M, Caiolfa V, Kitamura D, Restuccia U, Bachi A, Rocchi M, Ponzoni M, Ghia P, Caligaris-Cappio F.
    HS1 has a central role in the trafficking and homing of leukemic B cells.
    Blood. 2010 Nov 4;116(18):3537-46.


41. Torta F. Elviri L. Bachi A.
    Direct and indirect detection methods for the analysis of S-nitrosylated peptides and proteins.
    Methods Enzymol. 2010;473:265-80.


42. Magagnotti C, Fermo I, Carletti RM, Ferrari M, Bachi A.
    Comparison of different depletion strategies for improving resolution of the human urine proteome.
    Clin Chem Lab Med. 2010 Apr;48(4):531-5.


43. Matafora V, D'Amato A, Mori S, Blasi F, Bachi A.
    Proteomic analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition.
    Molecular &Cellular Proteomics. 2009;8(10):2243-55.


44. Torta F, Fusi M, Casari CS, Bottani CE, Bachi A.
    Titanium Dioxide Coated MALDI plate for on target Analysis of Phosphopeptides.
    J Proteome Res. 2009, 8, 1932-1942.


45. Torta F, Usuelli V, Malgaroli A, Bachi A.
    Proteomic analysis of protein S-nitrosylation.
    Proteomics. 2008 8(21):4484-94.


46. Bachi A, Bonaldi T.
    Quantitative proteomics as a new piece of the systems biology puzzle.
    J. Proteomics. 2008 ;71(3):357-67.


47. Bachi A, Simó C, Restuccia U, Guerrier L, Fortis F, Boschetti E, Masseroli M, Righetti PG.
    Performance of combinatorial peptide libraries in capturing the low-abundance proteome of red blood cells. 2. Behavior of resins containing individual amino acids.
    Anal Chem. 2008 May 15;80(10):3557-65.


48. Camerini S., Polci ML, Restuccia U, Usuelli V, Malgaroli A, Bachi A.
    A new approach to identify proteins modified by nitric oxide: the His-tag switch.
    J Proteome Res. 2007, 6(8):3224-31.


49. Diaz VM., Bachi A, Blasi F.
    Purification of the Prep1 interactome identifies novel pathways regulated by Prep1.
    Proteomics 2007, 7, 2617-2623.